ConferenceCall 2022 10 12

Session	Planning
Duration	1 hour
Date/Time	12 Oct 2022 16:00 GMT
	9:00am PDT/12:00pm EDT
	5:00pm BST/6:00pm CEST
Convener	Ken Baclawski

Ontology Summit 2023 Planning

Helping scientific researchers make better use of ontologies

Agenda

• Gary Berg-Cross will present suggestions for the summit theme. Video Recording
• Informal "brainstorming" session Video Recording

Conference Call Information

• Date: Wednesday, 12 Oct 2022
• Start Time: 9:00am PDT / 12:00pm EDT / 6:00pm CEST / 5:00pm BST / 1600 UTC
  • ref: World Clock
• Expected Call Duration: 1 hour
• Video Conference URL
  • Conference ID: 837 8041 8377
  • Passcode: 323309
• Chat Room

The unabbreviated URLs are:

• Conference URL: https://us02web.zoom.us/j/83780418377?pwd=MlRFTHJQclRBd3RhYVl3aG1rTHJOQT09
• Chat room: http://webconf.soaphub.org/conf/room/ontology_summit_2023

Attendees

• Gary Berg-Cross
• George Hurlburt
• Ken Baclawski
• Mike Bennett
• Russell Reinsch

[12:14] Gary BC: A theme for organizing the 2023 Ontology Summit... How to "help scientists make better use of ontologies" a goal set by James Overton who is will be be co-organizer with me.

• The Where, Who, and How details would be a good topic for the 2023 Ontology Summit.
• 40% of this could come from the BioMed domain and the OboFoundry and the another 40% from other domains and efforts with the remaining 20% devoted to bringing this together.

[12:15] Gary BC: Talks on Ontology Tools and Workflow management (FAIR ontology support)

• Ontology Development Kit (ODK): A toolkit for initializing a new ontology repository. The template includes a structured directory, a Makefile with automated release workflows, continuous integration testing, and full documentation.
• ROBOT: A command line tool to automate ontology workflows. It includes commands that can be used manually or integrated in automated processes to develop and release ontologies.

[12:16] Gary BC: Example of talk topics: James Overton overview

• COB the use of a high-level, core reference model (Chris Mungall)
• Ontology Development Kit (ODK): A toolkit for initializing a new ontology repository. The template includes a structured directory, a Makefile with automated release workflows, continuous integration testing, and full documentation.
• ROBOT: A command line tool to automate ontology workflows. It includes commands that can be used manually or integrated in automated processes to develop and release ontologies.
• Onto-Animals: Tools to extract external ontology terms, compare ontologies, edit ontology terms, query and visualize ontologies, and more.
• VOCOL: An integrated environment for collaborative vocabulary development
• Karma Data Integration: A data integration tool
• Ontofox: An ontology term and relation extraction and reuse tool
• Ubergraph: A sparql endpoint with many OBO ontologies loaded and pre-reasoned with simple triples materialized
  • OBO Dashboard: An assesment of OBO Foundry ontologies conformance to OBO Foundry principles
  • OBO Community Health Report: A self-updating assessment of the quality of metadata, responsiveness of the maintainers, and the overall community engagement for each OBO Foundry ontology.

[12:16] Gary BC: have to go. Let me know what else might be discussed about this.

[12:27] Ken Baclawski: We had a nice discussion. The planning process will continue next week at the same time and connection URL.

[12:28] Ken Baclawski: Meeting is adjourned.

[12:32] Gary BC: OK WE can follow up as needed. Maybe a discussion on the Forum???

Resources

• Recording of Proposal by Gary Berg-Cross
• Recording of Discussion Session

Next Meetings

	Session
ConferenceCall 2022 10 19	Planning
ConferenceCall 2022 10 26	Planning
ConferenceCall 2022 11 09	Planning
... further results